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WABI
2004
Springer
13 years 9 months ago
A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns
Abstract. Contact maps are a model to capture the core information in the structure of biological molecules, e.g., proteins. A contact map consists of an ordered set ¡ of elements...
Jens Gramm
JCB
2007
168views more  JCB 2007»
13 years 4 months ago
Fast Molecular Shape Matching Using Contact Maps
In this paper, we study the problem of computing the similarity of two protein structures ring their contact-map overlap. Contact-map overlap abstracts the problem of computing th...
Pankaj K. Agarwal, Nabil H. Mustafa, Yusu Wang
PVLDB
2010
129views more  PVLDB 2010»
13 years 2 months ago
Graph Pattern Matching: From Intractable to Polynomial Time
Graph pattern matching is typically defined in terms of subgraph isomorphism, which makes it an np-complete problem. Moreover, it requires bijective functions, which are often to...
Wenfei Fan, Jianzhong Li, Shuai Ma, Nan Tang, Ying...
PAMI
2006
168views more  PAMI 2006»
13 years 4 months ago
Graphical Models and Point Pattern Matching
This paper describes a novel solution to the rigid point pattern matching problem in Euclidean spaces of any dimension. Although we assume rigid motion, jitter is allowed. We pres...
Tibério S. Caetano, Terry Caelli, Dale Schu...
SPIRE
1999
Springer
13 years 8 months ago
Cross-Domain Approximate String Matching
Approximate string matching is an important paradigm in domains ranging from speech recognition to information retrieval and molecular biology. In this paper, we introduce a new f...
Daniel P. Lopresti, Gordon T. Wilfong