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» A Theoretical Analysis of Scalability of the Parallel Genome...
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IPPS
1998
IEEE
13 years 9 months ago
Performance Range Comparison via Crossing Point Analysis
Parallel programming is elusive. The relative performance of di erent parallel implementations varies with machine architecture, system and problem size. How to compare di erent i...
Xian-He Sun
PLDI
2012
ACM
11 years 8 months ago
Scalable and precise dynamic datarace detection for structured parallelism
Existing dynamic race detectors suffer from at least one of the following three limitations: (i) space overhead per memory location grows linearly with the number of parallel thre...
Raghavan Raman, Jisheng Zhao, Vivek Sarkar, Martin...
IPPS
2009
IEEE
14 years 7 days ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
SAC
2004
ACM
13 years 11 months ago
A parallel algorithm for the extraction of structured motifs
In this work we propose a parallel algorithm for the efficient extraction of binding-site consensus from genomic sequences. This algorithm, based on an existing approach, extracts...
Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T....
ISPA
2004
Springer
13 years 11 months ago
Cayley DHTs - A Group-Theoretic Framework for Analyzing DHTs Based on Cayley Graphs
Static DHT topologies influence important features of such DHTs such as scalability, communication load balancing, routing efficiency and fault tolerance. Nevertheless, it is co...
Changtao Qu, Wolfgang Nejdl, Matthias Kriesell