Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Recently, various synchronous grammars are proposed for syntax-based machine translation, e.g. synchronous context-free grammar and synchronous tree (sequence) substitution gramma...
Abstract In this paper we introduce the Weighted Suffix Tree, an efficient data structure for computing string regularities in weighted sequences of molecular data. Molecular Wei...
Costas S. Iliopoulos, Christos Makris, Yannis Pana...
Background: It has been suggested previously that genome and proteome sequences show characteristics typical of natural-language texts such as “signature-style” word usage ind...
Phrase-based decoding is conceptually simple and straightforward to implement, at the cost of drastically oversimplified reordering models. Syntactically aware models make it pos...