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    BMCBI
    2005
    145views more  BMCBI 2005»
    CAGER: classification analysis of gene expression regulation using multiple information sources
    13 years 4 months ago
    CAGER: classification analysis of gene expression regulation using multiple information sources
    Download  www.biomedcentral.com
    Background: Many classification approaches have been applied to analyzing transcriptional regulation of gene expressions. These methods build models that can explain a gene's...
    Jianhua Ruan, Weixiong Zhang
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    CIBCB
    2005
    IEEE
    80views Computational Biology» more  CIBCB 2005»
    A Transcriptional Approach to Gene Clustering
    13 years 6 months ago
    A Transcriptional Approach to Gene Clustering
    Download  www.tagkopouloslab.cs.ucdavis.edu
    — We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
    Ilias Tagkopoulos
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    BMCBI
    2005
    201views more  BMCBI 2005»
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
    13 years 4 months ago
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
    Download  www.biomedcentral.com
    Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
    Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
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    BMCBI
    2005
    169views more  BMCBI 2005»
    MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
    13 years 4 months ago
    MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
    Download  www.biomedcentral.com
    Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
    Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
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