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GECCO
2006
Springer
176views Optimization» more  GECCO 2006»
13 years 9 months ago
A genetic algorithm with backtracking for protein structure prediction
In this paper, we propose a simple genetic algorithm for finding the optimal conformation of a protein using the three-dimensional square HP model. A backtracking procedure is use...
Clayton Matthew Johnson, Anitha Katikireddy
APBC
2004
123views Bioinformatics» more  APBC 2004»
13 years 6 months ago
Empirical Knowledge and Genetic Algorithms for Selection of Amide I Frequencies in Protein Secondary Structure Prediction
Here we investigate an extension of a previously suggested "automatic amide I frequency selection procedure" where we introduce an additional criterion utilizing empiric...
Joachim A. Hering, Peter R. Innocent, Parvez I. Ha...
AE
2005
Springer
13 years 10 months ago
An Enhanced Genetic Algorithm for Protein Structure Prediction Using the 2D Hydrophobic-Polar Model
This paper presents an enhanced genetic algorithm for the protein structure prediction problem. A new fitness function, that uses the concept of radius of gyration, is proposed. Al...
Heitor S. Lopes, Marcos P. Scapin
PPSC
1997
13 years 6 months ago
Case Studies in Protein Structure Prediction with Real-valued Genetic Algorithms
Accurate and reliable protein structure prediction (PSP) eludes researchers primarily becausethe searchfor theminimumenergyconformeris computationallyintractable. This research di...
Charles E. Kaiser, Laurence D. Merkle, Gary B. Lam...
FGCS
2007
106views more  FGCS 2007»
13 years 5 months ago
A parallel hybrid genetic algorithm for protein structure prediction on the computational grid
Solving the structure prediction problem for complex proteins is difficult and computationally expensive. In this paper, we propose a bicriterion parallel hybrid genetic algorith...
Alexandru-Adrian Tantar, Nouredine Melab, El-Ghaza...