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BMCBI
2007
106views more  BMCBI 2007»
13 years 5 months ago
Constructing a meaningful evolutionary average at the phylogenetic center of mass
Background: As a consequence of the evolutionary process, data collected from related species tend to be similar. This similarity by descent can obscure subtler signals in the dat...
Eric A. Stone, Arend Sidow
SYRCODIS
2008
136views Database» more  SYRCODIS 2008»
13 years 6 months ago
Stochastic Approach to Binary Matrix Partitioning for Phylogenetic Networks
In this research we introduce the problem of the binary matrix partitioning in a biological context. Our idea is to use SNP matrix to construct a set of phylogenetic networks to r...
Victoria Kusherbaeva, Nikolay Vyahhi
WOB
2004
134views Bioinformatics» more  WOB 2004»
13 years 6 months ago
Reconstruction of Phylogenetic Trees using the Ant Colony Optimization Paradigm
We developed a new approach for the reconstruction of phylogenetic trees using ant colony optimization metaheuristics.Atree is constructed using a fully connected graph and the pro...
Heitor S. Lopes, Mauricio Perretto
BMCBI
2010
118views more  BMCBI 2010»
13 years 5 months ago
From learning taxonomies to phylogenetic learning: Integration of 16S rRNA gene data into FAME-based bacterial classification
Background: Machine learning techniques have shown to improve bacterial species classification based on fatty acid methyl ester (FAME) data. Nonetheless, FAME analysis has a limit...
Bram Slabbinck, Willem Waegeman, Peter Dawyndt, Pa...
INFORMATICALT
2010
103views more  INFORMATICALT 2010»
13 years 8 days ago
Multistage K-Means Clustering for Scenario Tree Construction
Abstract. In stochastic programming and decision analysis, an important issue consists in the approximate representation of the multidimensional stochastic underlying process in th...
Kristina Sutiene, Dalius Makackas, Henrikas Pranev...