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JMLR
2010
112views more  JMLR 2010»
12 years 11 months ago
Reduced-Rank Hidden Markov Models
Hsu et al. (2009) recently proposed an efficient, accurate spectral learning algorithm for Hidden Markov Models (HMMs). In this paper we relax their assumptions and prove a tighte...
Sajid M. Siddiqi, Byron Boots, Geoffrey J. Gordon
RECOMB
2005
Springer
14 years 4 months ago
Learning Interpretable SVMs for Biological Sequence Classification
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...
Christin Schäfer, Gunnar Rätsch, Sö...
BMCBI
2007
114views more  BMCBI 2007»
13 years 4 months ago
Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome
Background: The structure annotation of a genome is based either on ab initio methodologies or on similaritiy searches versus molecules that have been already annotated. Ab initio...
Nunzio D'Agostino, Alessandra Traini, Luigi Frusci...
RECOMB
2006
Springer
14 years 4 months ago
New Methods for Detecting Lineage-Specific Selection
Abstract. So far, most methods for identifying sequences under selection based on comparative sequence data have either assumed selectional pressures are the same across all branch...
Adam C. Siepel, Katherine S. Pollard, David Haussl...
ICMLA
2004
13 years 6 months ago
Planning with predictive state representations
Predictive state representation (PSR) models for controlled dynamical systems have recently been proposed as an alternative to traditional models such as partially observable Mark...
Michael R. James, Satinder P. Singh, Michael L. Li...