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» A q-enumeration of alternating permutations
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BMCBI
2007
115views more  BMCBI 2007»
13 years 5 months ago
Comparing sequences without using alignments: application to HIV/SIV subtyping
Background: In general, the construction of trees is based on sequence alignments. This procedure, however, leads to loss of informationwhen parts of sequence alignments (for inst...
Gilles Didier, Laurent Debomy, Maude Pupin, Ming Z...
BMCBI
2006
116views more  BMCBI 2006»
13 years 5 months ago
Optimized mixed Markov models for motif identification
Background: Identifying functional elements, such as transcriptional factor binding sites, is a fundamental step in reconstructing gene regulatory networks and remains a challengi...
Weichun Huang, David M. Umbach, Uwe Ohler, Leping ...
CORR
2010
Springer
261views Education» more  CORR 2010»
13 years 3 months ago
Analysis of Quasi-Cyclic LDPC codes under ML decoding over the erasure channel
In this paper, we show that over the binary erasure channel, Quasi-Cyclic LDPC codes can efficiently accommodate the hybrid iterative/ML decoding. We demonstrate that the quasicycl...
Mathieu Cunche, Valentin Savin, Vincent Roca
IACR
2011
162views more  IACR 2011»
12 years 5 months ago
The Parazoa Family: Generalizing the Sponge Hash Functions
Abstract. Sponge functions were introduced by Bertoni et al. as an alternative to the classical MerkleDamg˚ard design. Many hash function submissions to the SHA-3 competition laun...
Elena Andreeva, Bart Mennink, Bart Preneel