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» A rule-based approach for RNA pseudoknot prediction
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IJDMB
2008
60views more  IJDMB 2008»
13 years 5 months ago
A rule-based approach for RNA pseudoknot prediction
Xuezheng Fu, Hao Wang, Robert W. Harrison, William...
ICPP
2006
IEEE
13 years 11 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
BIBE
2007
IEEE
138views Bioinformatics» more  BIBE 2007»
14 years 2 days ago
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, We...
ISBRA
2007
Springer
13 years 12 months ago
Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice
Abstract. The lattice approach to biological structural analysis was made popular by the HP model for protein folding, but had not been used previously for RNA secondary structure ...
Minghui Jiang, Martin Mayne, Joel Gillespie