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» A scoring matrix approach to detecting miRNA target sites
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PAKDD
2009
ACM
120views Data Mining» more  PAKDD 2009»
14 years 2 months ago
Detecting Link Hijacking by Web Spammers.
Abstract. Since current search engines employ link-based ranking algorithms as an important tool to decide a ranking of sites, Web spammers are making a significant effort to man...
Masaru Kitsuregawa, Masashi Toyoda, Young-joo Chun...
BMCBI
2010
152views more  BMCBI 2010»
13 years 5 months ago
FITBAR: a web tool for the robust prediction of prokaryotic regulons
Background: The binding of regulatory proteins to their specific DNA targets determines the accurate expression of the neighboring genes. The in silico prediction of new binding s...
Jacques Oberto
BIBM
2010
IEEE
156views Bioinformatics» more  BIBM 2010»
13 years 2 months ago
Truncation of protein sequences for fast profile alignment with application to subcellular localization
We have recently found that the computation time of homology-based subcellular localization can be substantially reduced by aligning profiles up to the cleavage site positions of s...
Man-Wai Mak, Wei Wang, Sun-Yuan Kung
CSB
2005
IEEE
168views Bioinformatics» more  CSB 2005»
13 years 10 months ago
cis-Regulatory Element Prediction in Mammalian Genomes
The identification of cis-regulatory elements and modules is an important step in understanding the regulation of genes. We have developed a pipeline capable of running multiple m...
Asim S. Siddiqui, Gordon Robertson, Misha Bilenky,...
BMCBI
2004
150views more  BMCBI 2004»
13 years 4 months ago
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...