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ISCAPDCS
2001
13 years 6 months ago
End-user Tools for Application Performance Analysis Using Hardware Counters
One purpose of the end-user tools described in this paper is to give users a graphical representation of performance information that has been gathered by instrumenting an applica...
Kevin S. London, Jack Dongarra, Shirley Moore, Phi...
ASPLOS
2009
ACM
14 years 5 months ago
Dynamic prediction of collection yield for managed runtimes
The growth in complexity of modern systems makes it increasingly difficult to extract high-performance. The software stacks for such systems typically consist of multiple layers a...
Michal Wegiel, Chandra Krintz
PPOPP
2010
ACM
14 years 1 months ago
Using data structure knowledge for efficient lock generation and strong atomicity
To achieve high-performance on multicore systems, sharedmemory parallel languages must efficiently implement atomic operations. The commonly used and studied paradigms for atomici...
Gautam Upadhyaya, Samuel P. Midkiff, Vijay S. Pai
BMCBI
2002
137views more  BMCBI 2002»
13 years 4 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2011
12 years 11 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...