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GCCB
2006
13 years 8 months ago
Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs
During the last few years more and more functionalities of RNA have been discovered that were previously thought of being carried out by proteins alone. One of the most striking di...
Patrick May, Gunnar W. Klau, Markus Bauer, Thomas ...
FPL
2008
Springer
150views Hardware» more  FPL 2008»
13 years 6 months ago
Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs
Wavefront algorithms, such as the Smith-Waterman algorithm, are commonly used in bioinformatics for exact local and global sequence alignment. These algorithms are highly computat...
Betul Buyukkurt, Walid A. Najjar
VLSISP
2011
358views Database» more  VLSISP 2011»
12 years 11 months ago
Accelerating Machine-Learning Algorithms on FPGAs using Pattern-Based Decomposition
Machine-learning algorithms are employed in a wide variety of applications to extract useful information from data sets, and many are known to suffer from superlinear increases in ...
Karthik Nagarajan, Brian Holland, Alan D. George, ...
ICDE
2011
IEEE
235views Database» more  ICDE 2011»
12 years 8 months ago
Fast data analytics with FPGAs
—The rapidly increasing amount of data available for real-time analysis (i.e., so-called operational business intelligence) is creating an interesting opportunity for creative ap...
Louis Woods, Gustavo Alonso
DATE
2006
IEEE
140views Hardware» more  DATE 2006»
13 years 10 months ago
Optimization of regular expression pattern matching circuits on FPGA
Regular expressions are widely used in Network Intrusion Detection System (NIDS) to represent patterns of network attacks. Since traditional software-only NIDS cannot catch up to ...
Cheng-Hung Lin, Chih-Tsun Huang, Chang-Ping Jiang,...