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» Advances on sorting by reversals
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BIOCOMP
2006
13 years 7 months ago
Improving the Efficiency of Sorting by Reversals
Sorting signed permutations by reversals is a fundamental problem in computationial molecular biology. In this paper we present an improved algorithm for sorting by reversals. Our...
Yijie Han
CPM
2004
Springer
94views Combinatorics» more  CPM 2004»
13 years 11 months ago
Sorting by Length-Weighted Reversals: Dealing with Signs and Circularity
Abstract. We consider the problem of sorting linear and circular permutations and 0/1 sequences by reversals in a length-sensitive cost model. We extend the results on sorting by l...
Firas Swidan, Michael A. Bender, Dongdong Ge, Sima...
WABI
2005
Springer
132views Bioinformatics» more  WABI 2005»
13 years 11 months ago
Perfect Sorting by Reversals Is Not Always Difficult
—We propose new algorithms for computing pairwise rearrangement scenarios that conserve the combinatorial structure of genomes. More precisely, we investigate the problem of sort...
Sèverine Bérard, Anne Bergeron, Cedr...
ITIIS
2010
183views more  ITIIS 2010»
13 years 4 months ago
Reversible Watermarking Method Using Optimal Histogram Pair Shifting Based on Prediction and Sorting
To be reversible as a data hiding method, the original content and hidden message should be completely recovered. One important objective of this approach is to achieve high embed...
Hee Joon Hwang, Hyoung Joong Kim, Vasiliy Sachnev,...
CPM
2004
Springer
107views Combinatorics» more  CPM 2004»
13 years 9 months ago
Sorting by Reversals in Subquadratic Time
The problem of sorting a signed permutation by reversals is inspired by genome rearrangements in computational molecular biology. Given two genomes represented as two signed permut...
Eric Tannier, Marie-France Sagot