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BMCBI
2007
153views more  BMCBI 2007»
13 years 5 months ago
A new pairwise kernel for biological network inference with support vector machines
Background: Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-pro...
Jean-Philippe Vert, Jian Qiu, William Stafford Nob...
HPDC
1995
IEEE
13 years 9 months ago
Loop Scheduling for Heterogeneity
In this paper, we study the problem of scheduling parallel loops at compile-time for a heterogeneous network of machines. We consider heterogeneity in three aspects of parallel pr...
Michal Cierniak, Wei Li, Mohammed Javeed Zaki
BIOSYSTEMS
2008
130views more  BIOSYSTEMS 2008»
13 years 5 months ago
Biological networks in metabolic P systems
The metabolic P algorithm is a procedure which determines, in a biochemically realistic way, the evolution of P systems representing biological phenomena. A new formulation of thi...
Vincenzo Manca, Luca Bianco
NAR
2011
191views Computer Vision» more  NAR 2011»
12 years 8 months ago
ConsensusPathDB: toward a more complete picture of cell biology
ConsensusPathDB is a meta-database that integrates different types of functional interactions from heterogeneous interaction data resources. Physical protein interactions, metabol...
Atanas Kamburov, Konstantin Pentchev, Hanna Galick...
CIBCB
2009
IEEE
13 years 3 months ago
An automatic gene ontology software tool for bicluster and cluster comparisons
We propose an Automatic Gene Ontology (AGO) software as a flexible, open-source Matlab software tool that allows the user to easily compare the results of the bicluster and cluster...
Fadhl M. Al-Akwaa, Yasser M. Kadah