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» Algorithms for Large, Sparse Network Alignment Problems
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BMCBI
2007
107views more  BMCBI 2007»
13 years 5 months ago
Progressive multiple sequence alignments from triplets
Motivation: The quality of progressive sequence alignments strongly depends on the accuracy of the individual pairwise alignment steps since gaps that are introduced at one step c...
Matthias Kruspe, Peter F. Stadler
CORR
2007
Springer
81views Education» more  CORR 2007»
13 years 5 months ago
Faster exon assembly by sparse spliced alignment
Assembling a gene from candidate exons is an important problem in computational biology. Among the most successful approaches to this problem is spliced alignment, proposed by Gelf...
Alexandre Tiskin
GCB
2006
Springer
140views Biometrics» more  GCB 2006»
13 years 9 months ago
PALMA: Perfect Alignments using Large Margin Algorithms
: Despite many years of research on how to properly align sequences in the presence of sequencing errors, alternative splicing and micro-exons, the correct alignment of mRNA sequen...
Gunnar Rätsch, Bettina Hepp, Uta Schulze, Che...
BIOINFORMATICS
2011
13 years 8 days ago
Integrative network alignment reveals large regions of global network similarity in yeast and human
Motivation: High-throughput methods for detecting molecular interactions have produced large sets of biological network data with much more yet to come. Analogous to sequence alig...
Oleksii Kuchaiev, Natasa Przulj
ICASSP
2010
IEEE
13 years 5 months ago
Gradient Polytope Faces Pursuit for large scale sparse recovery problems
Polytope Faces Pursuit is a greedy algorithm that performs Basis Pursuit with similar order complexity to Orthogonal Matching Pursuit. The algorithm adds one basis vector at a tim...
Aris Gretsistas, Ivan Damnjanovic, Mark D. Plumble...