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IPPS
2006
IEEE
13 years 10 months ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
FPGA
2003
ACM
156views FPGA» more  FPGA 2003»
13 years 10 months ago
Architectures and algorithms for synthesizable embedded programmable logic cores
As integrated circuits become more and more complex, the ability to make post-fabrication changes will become more and more attractive. This ability can be realized using programm...
Noha Kafafi, Kimberly Bozman, Steven J. E. Wilton
ICCS
2005
Springer
13 years 10 months ago
Resource Partitioning Algorithms in a Programmable Service Grid Architecture
Abstract. We propose the use of programmable Grid resource partitioning heuristics in the context of a distributed service Grid management architecture. The architecture is capable...
Pieter Thysebaert, Bruno Volckaert, Marc De Leenhe...
VLSID
2006
IEEE
158views VLSI» more  VLSID 2006»
13 years 10 months ago
Programmable LDPC Decoder Based on the Bubble-Sort Algorithm
Low density parity check (LDPC) codes are one of the most powerful error correcting codes known. Recent research have pointed out their potential for a low cost, low latency hardw...
Rohit Singhal, Gwan S. Choi, Rabi N. Mahapatra
BMCBI
2007
233views more  BMCBI 2007»
13 years 4 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong