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ISMB
2001
13 years 6 months ago
Using mixtures of common ancestors for estimating the probabilities of discrete events in biological sequences
Accurately estimating probabilities from observations is important for probabilistic-based approaches to problems in computational biology. In this paper we present a biologically...
Eleazar Eskin, William Noble Grundy, Yoram Singer
TIT
2010
170views Education» more  TIT 2010»
13 years 6 days ago
Belief propagation estimation of protein and domain interactions using the sum-product algorithm
We present a novel framework to estimate protein-protein (PPI) and domain-domain (DDI) interactions based on a belief propagation estimation method that efficiently computes inter...
Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale ...
JCB
2002
74views more  JCB 2002»
13 years 5 months ago
Using Substitution Matrices to Estimate Probability Distributions for Biological Sequences
Accurately estimating probabilities from observations is important for probabilistic-based approaches to problems in computational biology. In this paper we present a biologically...
Eleazar Eskin, William Stafford Noble, Yoram Singe...
VTS
2006
IEEE
98views Hardware» more  VTS 2006»
13 years 11 months ago
Iterative OPDD Based Signal Probability Calculation
This paper presents an improved method to accurately estimate signal probabilities using ordered partial decision diagrams (OPDDs) [Kodavarti 93] for partial representation of the...
Avijit Dutta, Nur A. Touba
NIPS
2003
13 years 6 months ago
Linear Response for Approximate Inference
Belief propagation on cyclic graphs is an efficient algorithm for computing approximate marginal probability distributions over single nodes and neighboring nodes in the graph. I...
Max Welling, Yee Whye Teh