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BMCBI
2006
166views more  BMCBI 2006»
13 years 5 months ago
bioNMF: a versatile tool for non-negative matrix factorization in biology
Background: In the Bioinformatics field, a great deal of interest has been given to Non-negative matrix factorization technique (NMF), due to its capability of providing new insig...
Alberto D. Pascual-Montano, Pedro Carmona-Saez, Mo...
WWW
2010
ACM
14 years 7 days ago
Automated performance assessment for service-oriented middleware: a case study on BPEL engines
Middleware for Web service compositions, such as BPEL engines, provides the execution environment for services as well as additional functionalities, such as monitoring and self-t...
Domenico Bianculli, Walter Binder, Mauro Luigi Dra...
BMCBI
2005
246views more  BMCBI 2005»
13 years 5 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
13 years 3 months ago
Probabilistic topic modeling for genomic data interpretation
Recently, the concept of a species containing both core and distributed genes, known as the supra- or pangenome theory, has been introduced. In this paper, we aim to develop a new ...
Xin Chen, Xiaohua Hu, Xiajiong Shen, Gail Rosen
DEBS
2010
ACM
13 years 9 months ago
Evaluation of streaming aggregation on parallel hardware architectures
We present a case study parallelizing streaming aggregation on three different parallel hardware architectures. Aggregation is a performance-critical operation for data summarizat...
Scott Schneider, Henrique Andrade, Bugra Gedik, Ku...