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RECOMB
2009
Springer
10 years 14 days ago
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations
Collective behavior involving distally separate regions in a protein is known to widely affect its function. In this paper, we present an online approach to study and characterize ...
Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnik...
HICSS
2007
IEEE
119views Biometrics» more  HICSS 2007»
9 years 6 months ago
Collection of U.S. Extremist Online Forums: A Web Mining Approach
Extremists’ exploitation of computer-mediated communications such as online forums has recently gained much attention from academia and the government. However, due to the cover...
Yilu Zhou, Jialun Qin, Guanpi Lai, Hsinchun Chen
CPHYSICS
2007
84views more  CPHYSICS 2007»
8 years 12 months ago
Simulating botulinum neurotoxin with constant pH molecular dynamics in Generalized Born implicit solvent
A new method was proposed by Mongan et al for constant pH molecular dynamics simulation and was implemented in AMBER 8 package. Protonation states are modeled with different char...
Yongzhi Chen, Xin Chen, Yuefan Deng
ANSS
2006
IEEE
9 years 6 months ago
iSimBioSys: A Discrete Event Simulation Platform for 'in silico' study of biological systems
With the availability of huge databases cataloguing the various molecular “parts” of complex biological systems, researchers from multiple disciplines have focused on developi...
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. ...
ICAI
2007
9 years 1 months ago
Mining and Dynamic Simulation of Sub-Networks from Large Biomolecular Networks
Biomolecular networks dynamically respond to stimuli and implement cellular function. Understanding these dynamic changes is the key challenge for cell biologists. As biomolecular...
Xiaohua Hu, Fang-Xiang Wu, Michael K. Ng, Bahrad A...
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