Sciweavers

102 search results - page 3 / 21
» Ancestral sequence alignment under optimal conditions
Sort
View
BMCBI
2005
115views more  BMCBI 2005»
13 years 5 months ago
Statistical distributions of optimal global alignment scores of random protein sequences
Background: The inference of homology from statistically significant sequence similarity is a central issue in sequence alignments. So far the statistical distribution function un...
Hongxia Pang, Jiaowei Tang, Su-Shing Chen, Shiheng...
BMCBI
2011
13 years 9 days ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
WABI
2005
Springer
117views Bioinformatics» more  WABI 2005»
13 years 11 months ago
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
Multiple Sequence Alignment (MSA) is one of the most fundamental problems in computational molecular biology. The running time of the best known scheme for finding an optimal ali...
Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny
BMCBI
2005
158views more  BMCBI 2005»
13 years 5 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
CVPR
2006
IEEE
14 years 7 months ago
Kernel-based Template Alignment
This paper introduces a novel kernel-based method for template tracking in video sequences. The method is derived for a general warping transformation, and its application to affi...
Igor Guskov