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DGO
2011
277views Education» more  DGO 2011»
12 years 4 months ago
Application of the MINOE regulatory analysis framework: case studies
In this paper, we describe a tool to help holistically understand, research and analyze the relationship between an ecosystem model and the relevant laws. Specifically, a software...
Julia A. Ekstrom, Gloria T. Lau, Kincho H. Law, Ma...
CMSB
2006
Springer
13 years 8 months ago
Compositional Reachability Analysis of Genetic Networks
Genetic regulatory networks have been modeled as discrete transition systems by many approaches, benefiting from a large number of formal verification algorithms available for the ...
Gregor Gößler
JMLR
2010
159views more  JMLR 2010»
12 years 12 months ago
Inference of Sparse Networks with Unobserved Variables. Application to Gene Regulatory Networks
Networks are becoming a unifying framework for modeling complex systems and network inference problems are frequently encountered in many fields. Here, I develop and apply a gener...
Nikolai Slavov
IJKDB
2010
141views more  IJKDB 2010»
13 years 2 months ago
Mining Frequent Boolean Expressions: Application to Gene Expression and Regulatory Modeling
Regulatory network analysis and other bioinformatics tasks require the ability to induce and represent arbitrary boolean expressions from data sources. We introduce a novel framew...
Mohammed Javeed Zaki, Naren Ramakrishnan, Lizhuang...
CGF
2008
142views more  CGF 2008»
13 years 5 months ago
Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context
DNA microarrays are used to measure the expression levels of thousands of genes simultaneously. In a time series experiment, the gene expressions are measured as a function of tim...
Michel A. Westenberg, Sacha A. F. T. van Hijum, Os...