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DGO
2011
277views Education» more  DGO 2011»
12 years 5 months ago
Application of the MINOE regulatory analysis framework: case studies
In this paper, we describe a tool to help holistically understand, research and analyze the relationship between an ecosystem model and the relevant laws. Specifically, a software...
Julia A. Ekstrom, Gloria T. Lau, Kincho H. Law, Ma...
CMSB
2006
Springer
13 years 9 months ago
Compositional Reachability Analysis of Genetic Networks
Genetic regulatory networks have been modeled as discrete transition systems by many approaches, benefiting from a large number of formal verification algorithms available for the ...
Gregor Gößler
JMLR
2010
159views more  JMLR 2010»
13 years 7 days ago
Inference of Sparse Networks with Unobserved Variables. Application to Gene Regulatory Networks
Networks are becoming a unifying framework for modeling complex systems and network inference problems are frequently encountered in many fields. Here, I develop and apply a gener...
Nikolai Slavov
IJKDB
2010
141views more  IJKDB 2010»
13 years 2 months ago
Mining Frequent Boolean Expressions: Application to Gene Expression and Regulatory Modeling
Regulatory network analysis and other bioinformatics tasks require the ability to induce and represent arbitrary boolean expressions from data sources. We introduce a novel framew...
Mohammed Javeed Zaki, Naren Ramakrishnan, Lizhuang...
CGF
2008
142views more  CGF 2008»
13 years 5 months ago
Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context
DNA microarrays are used to measure the expression levels of thousands of genes simultaneously. In a time series experiment, the gene expressions are measured as a function of tim...
Michel A. Westenberg, Sacha A. F. T. van Hijum, Os...