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» Assembling genomes on large-scale parallel computers
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JPDC
2007
93views more  JPDC 2007»
13 years 5 months ago
Assembling genomes on large-scale parallel computers
Anantharaman Kalyanaraman, Scott J. Emrich, Patric...
SC
2009
ACM
14 years 1 days ago
Highly scalable genome assembly on campus grids
Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...
BICOB
2009
Springer
13 years 12 months ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...
LSGRID
2004
Springer
13 years 10 months ago
Development of a Grid Infrastructure for Functional Genomics
The BRIDGES project is incrementally developing and exploring database integration over six geographically distributed research sites with the framework of a Wellcome Trust biomedi...
Richard O. Sinnott, Micha Bayer, Derek Houghton, D...
BMCBI
2005
246views more  BMCBI 2005»
13 years 5 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...