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JCB
2008
108views more  JCB 2008»
13 years 9 months ago
Asymptotics of RNA Shapes
Abstract. RNA shapes, introduced by Giegerich et al. (17), provide a useful classification of the branching complexity for RNA secondary structures. In this paper, we derive an exa...
W. A. Lorenz, Yann Ponty, Peter Clote
BMCBI
2008
123views more  BMCBI 2008»
13 years 9 months ago
Shape based indexing for faster search of RNA family databases
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
Stefan Janssen, Jens Reeder, Robert Giegerich
GCB
2010
Springer
145views Biometrics» more  GCB 2010»
13 years 7 months ago
Shape-based Barrier Estimation for RNAs
: The ability of some RNA molecules to switch between different metastable conformations plays an important role in cellular processes. In order to identify such molecules and to p...
Sergiy Bogomolov, Martin Mann, Björn Voß...