JCB 2008 - PDF Preprint Papers

JCB 2008

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JCB
2008

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Efficiently Identifying Max-Gap Clusters in Pairwise Genome Comparison

13 years 5 months ago

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The spatial clustering of genes across different genomes has been used to study important problems in comparative genomics, from identification of operons to detection of homologo...

Xu Ling, Xin He, Dong Xin, Jiawei Han

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Id	Views	Title	Status

1	170	Efficiently Identifying Max-Gap Clusters in Pairwise Genome Comparison	claim
2	159	BayesMD: Flexible Biological Modeling for Motif Discovery	claim
3	144	Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes	claim
4	122	Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences	claim
5	111	Sorting Genomes with Centromeres by Translocations	claim
6	108	Asymptotics of RNA Shapes	claim
7	106	Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment	claim
8	102	DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications	claim
9	102	Canonical RNA Pseudoknot Structures	claim
10	96	Computing Knock-Out Strategies in Metabolic Networks	claim
11	94	Prioritize and Select SNPs for Association Studies with Multi-Stage Designs	claim
12	91	Computational Quantification of Peptides from LC-MS Data	claim
13	90	A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast	claim
14	82	Assessing the Exceptionality of Network Motifs	claim
15	82	Determining Nucleolar Association from Sequence by Leveraging Protein-Protein Interactions	claim
16	81	New Constructions of One- and Two-Stage Pooling Designs	claim
17	81	Estimating the Ancestral Recombinations Graph (ARG) as Compatible Networks of SNP Patterns	claim
18	75	Reconciliation with Non-Binary Species Trees	claim
19	75	New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design	claim
20	73	Identifying Genes of Gene Regulatory Networks Using Formal Concept Analysis	claim
21	73	Computation-Based Discovery of Cis-Regulatory Modules by Hidden Markov Model	claim
22	71	Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm	claim
23	71	Feedback Algorithm and Web-Server for Protein Structure Alignment	claim
24	69	Gene Family Evolution by Duplication, Speciation, and Loss	claim
25	52	Spectrum-Based De Novo Repeat Detection in Genomic Sequences	claim
26	46	Inferring Ancestral Gene Orders for a Family of Tandemly Arrayed Genes	claim

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