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EVOW
2007
Springer
13 years 11 months ago
Robust Peak Detection and Alignment of nanoLC-FT Mass Spectrometry Data
In liquid chromatography-mass spectrometry (LC-MS) based expression proteomics, samples from different groups are analyzed comparatively in order to detect differences that can p...
Marius C. Codrea, Connie R. Jimenez, Sander R. Pie...
BMCBI
2011
12 years 12 months ago
MRCQuant- an accurate LC/MS relative isotopic quantification algorithm on TOF instruments
Background: Relative isotope abundance quantification, which can be used for peptide identification and differential peptide quantification, plays an important role in liquid chro...
William H. Haskins, Konstantinos Petritis, Jianqiu...
BMCBI
2011
12 years 12 months ago
ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring
Background: Since its inception, proteomics has essentially operated in a discovery mode with the goal of identifying and quantifying the maximal number of proteins in a sample. I...
Mi-Youn K. Brusniak, Sung-Tat Kwok, Mark Christian...
BMCBI
2008
158views more  BMCBI 2008»
13 years 5 months ago
LC-MSsim - a simulation software for liquid chromatography mass spectrometry data
Background: Mass Spectrometry coupled to Liquid Chromatography (LC-MS) is commonly used to analyze the protein content of biological samples in large scale studies. The data resul...
Ole Schulz-Trieglaff, Nico Pfeifer, Clemens Gr&oum...
BMCBI
2010
96views more  BMCBI 2010»
13 years 5 months ago
FluTyper-an algorithm for automated typing and subtyping of the influenza virus from high resolution mass spectral data
Background: High resolution mass spectrometry has been employed to rapidly and accurately type and subtype influenza viruses. The detection of signature peptides with unique theor...
Jason W. H. Wong, Alexander B. Schwahn, Kevin M. D...