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» BioBench: A Benchmark Suite of Bioinformatics Applications
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ISPASS
2005
IEEE
13 years 10 months ago
BioBench: A Benchmark Suite of Bioinformatics Applications
Recent advances in bioinformatics and the significant increase in computational power available to researchers have made it possible to make better use of the vast amounts of gene...
Kursad Albayraktaroglu, Aamer Jaleel, Xue Wu, Mano...
BIOCOMP
2006
13 years 6 months ago
Performance of Sequence Alignment Bioinformatics Applications on General Purpose Processors: A Case Study
- Aligning specific sequences against other known sequences in a database is a central aspect of bioinformatics. New experimental data being added continuously to these databases n...
Pradeep Nair, Eugene John
IISWC
2006
IEEE
13 years 10 months ago
An Architectural Characterization Study of Data Mining and Bioinformatics Workloads
— Data mining is the process of automatically finding implicit, previously unknown, and potentially useful information from large volumes of data. Recent advances in data extrac...
Berkin Özisikyilmaz, Ramanathan Narayanan, Jo...
HIPC
2005
Springer
13 years 10 months ago
Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors
Graph theoretic problems are representative of fundamental computations in traditional and emerging scientific disciplines like scientific computing, computational biology and b...
David A. Bader, Kamesh Madduri
IISWC
2006
IEEE
13 years 10 months ago
Load Instruction Characterization and Acceleration of the BioPerf Programs
The load instructions of some of the bioinformatics applications in the BioPerf suite possess interesting characteristics: only a few static loads cover almost the entire dynamic ...
Paruj Ratanaworabhan, Martin Burtscher