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» Biological Networks: Comparison, Conservation, and Evolution...
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PPSN
2004
Springer
13 years 10 months ago
Coupling of Evolution and Learning to Optimize a Hierarchical Object Recognition Model
Abstract. A key problem in designing artificial neural networks for visual object recognition tasks is the proper choice of the network architecture. Evolutionary optimization met...
Georg Schneider, Heiko Wersing, Bernhard Sendhoff,...
RECOMB
2007
Springer
14 years 5 months ago
QNet: A Tool for Querying Protein Interaction Networks
Molecular interaction databases can be used to study the evolution of molecular pathways across species. Querying such pathways is a challenging computational problem, and recent e...
Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan R...
RECOMB
2006
Springer
14 years 5 months ago
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
Computational and comparative analysis of protein-protein interaction (PPI) networks enable understanding of the modular organization of the cell through identification of functio...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
BMCBI
2006
156views more  BMCBI 2006»
13 years 5 months ago
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
Background: Molecular evolutionary studies of noncoding sequences rely on multiple alignments. Yet how multiple alignment accuracy varies across sequence types, tree topologies, d...
Daniel A. Pollard, Alan M. Moses, Venky N. Iyer, M...
BMCBI
2007
156views more  BMCBI 2007»
13 years 5 months ago
Bio: : NEXUS: a Perl API for the NEXUS format for comparative biological data
Background: Evolutionary analysis provides a formal framework for comparative analysis of genomic and other data. In evolutionary analysis, observed data are treated as the termin...
Thomas Hladish, Vivek Gopalan, Chengzhi Liang, Wei...