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» Biological information as set-based complexity
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SAC
2005
ACM
13 years 10 months ago
A complex biological database querying method
Many biological information systems rely on relational database management systems (RDBMS) to manage high-throughput biological data. While keeping these data well archived, organ...
Jake Yue Chen, John V. Carlis, Ning Gao
SMA
2008
ACM
155views Solid Modeling» more  SMA 2008»
13 years 5 months ago
Filament tracking and encoding for complex biological networks
We present a framework for segmenting and storing filament networks from scalar volume data. Filament structures are commonly found in data generated using high-throughput microsc...
David Mayerich, John Keyser
RECOMB
2009
Springer
14 years 5 months ago
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information
Abstract. Hierarchical clustering is a popular method for grouping together similar elements based on a distance measure between them. In many cases, annotation information for som...
Saket Navlakha, James Robert White, Niranjan Nagar...
BMCBI
2006
156views more  BMCBI 2006»
13 years 5 months ago
GOFFA: Gene Ontology For Functional Analysis - A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data
Background: Gene Ontology (GO) characterizes and categorizes the functions of genes and their products according to biological processes, molecular functions and cellular componen...
Hongmei Sun, Hong Fang, Tao Chen, Roger Perkins, W...
BMCBI
2010
148views more  BMCBI 2010»
13 years 5 months ago
Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs
Background: Extensive and automated data integration in bioinformatics facilitates the construction of large, complex biological networks. However, the challenge lies in the inter...
Mara L. Hartsperger, Florian Blöchl, Volker S...