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» BlueGene L applications: Parallelism On a Massive Scale
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IJHPCA
2008
96views more  IJHPCA 2008»
13 years 4 months ago
BlueGene/L applications: Parallelism On a Massive Scale
pc.sagepub.com/cgi/content/abstract/22/1/33 The online version of this article can be found at: Published by: http://www.sagepublications.com can be found at:International Journal ...
Bronis R. de Supinski, Martin Schulz, Vasily Bulat...
CODES
2005
IEEE
13 years 10 months ago
Blue matter on blue gene/L: massively parallel computation for biomolecular simulation
This paper provides an overview of the Blue Matter application development effort within the Blue Gene project that supports our scientific simulation efforts in the areas of pro...
Robert S. Germain, Blake G. Fitch, Aleksandr Raysh...
IPPS
2006
IEEE
13 years 10 months ago
Achieving strong scaling with NAMD on Blue Gene/L
NAMD is a scalable molecular dynamics application, which has demonstrated its performance on several parallel computer architectures. Strong scaling is necessary for molecular dyn...
Sameer Kumar, Chao Huang, George Almási, La...
IPPS
2006
IEEE
13 years 10 months ago
A study of MPI performance analysis tools on Blue Gene/L
Applications on todays massively parallel supercomputers rely on performance analysis tools to guide them toward scalable performance on thousands of processors. However, conventi...
I-Hsin Chung, Robert Walkup, Hui-Fang Wen, Hao Yu
CF
2007
ACM
13 years 8 months ago
Parallel genomic sequence-search on a massively parallel system
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...