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» Boolean Networks Design by Genetic Algorithms
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ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
13 years 11 months ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
GECCO
2008
Springer
117views Optimization» more  GECCO 2008»
13 years 6 months ago
CrossNet: a framework for crossover with network-based chromosomal representations
We propose a new class of crossover operators for genetic algorithms (CrossNet) which use a network-based (or graphbased) chromosomal representation. We designed CrossNet with the...
Forrest Stonedahl, William Rand, Uri Wilensky
GECCO
2007
Springer
177views Optimization» more  GECCO 2007»
13 years 11 months ago
Takeover times on scale-free topologies
The topological properties of a network directly impact the flow of information through a system. In evolving populations, the topology of inter-individual interactions affects th...
Joshua L. Payne, Margaret J. Eppstein
BMCBI
2005
130views more  BMCBI 2005»
13 years 5 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...