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» Boosting Relational Sequence Alignments
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ICDM
2008
IEEE
106views Data Mining» more  ICDM 2008»
13 years 11 months ago
Boosting Relational Sequence Alignments
The task of aligning sequences arises in many applications. Classical dynamic programming approaches require the explicit state enumeration in the reward model. This is often impr...
Andreas Karwath, Kristian Kersting, Niels Landwehr
WABI
2007
Springer
123views Bioinformatics» more  WABI 2007»
13 years 11 months ago
Inverse Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...
Eagu Kim, John D. Kececioglu
ACL
2006
13 years 6 months ago
Boosting Statistical Word Alignment Using Labeled and Unlabeled Data
This paper proposes a semi-supervised boosting approach to improve statistical word alignment with limited labeled data and large amounts of unlabeled data. The proposed approach ...
Hua Wu, Haifeng Wang, Zhan-yi Liu
TCBB
2008
120views more  TCBB 2008»
13 years 5 months ago
Learning Scoring Schemes for Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of scoring scheme is critical. Even small changes in gap penalties, for example, can yield radically different alignments. A rigorous...
Eagu Kim, John D. Kececioglu
ALMOB
2008
160views more  ALMOB 2008»
13 years 5 months ago
Syntenator: Multiple gene order alignments with a gene-specific scoring function
Background: Identification of homologous regions or conserved syntenies across genomes is one crucial step in comparative genomics. This task is usually performed by genome alignm...
Christian Rödelsperger, Christoph Dieterich