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» Bounded Hairpin Completion
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LATA
2009
Springer
13 years 11 months ago
Bounded Hairpin Completion
We consider a restricted variant of the hairpin completion called bounded hairpin completion. The hairpin completion is a formal operation inspired from biochemistry. Applied to a ...
Masami Ito, Peter Leupold, Victor Mitrana
SOFSEM
2012
Springer
12 years 11 days ago
Iterated Hairpin Completions of Non-crossing Words
Abstract. Iterated hairpin completion is an operation on formal languages that is inspired by the hairpin formation in DNA biochemistry. Iterated hairpin completion of a word (or m...
Lila Kari, Steffen Kopecki, Shinnosuke Seki
CORR
2011
Springer
193views Education» more  CORR 2011»
12 years 11 months ago
On the regularity of iterated hairpin completion of a single word
Hairpin completion is an abstract operation modeling a DNA biooperation which receives as input a DNA strand w = xαyα, and outputs w = xαy¯αx, where x denotes the Watson-Cric...
Lila Kari, Steffen Kopecki, Shinnosuke Seki
CORR
2010
Springer
78views Education» more  CORR 2010»
13 years 4 months ago
On the Iterated Hairpin Completion
The hairpin completion is a natural operation on formal languages which has been inspired by biochemistry and DNA-computing. In this paper we solve two problems which were posed f...
Steffen Kopecki
CSB
2005
IEEE
140views Bioinformatics» more  CSB 2005»
13 years 10 months ago
TPR Packing Analysis and 3D Modeling for the HAT Domain of Human Crooked Neck Protein
Human crooked neck protein (hcrn) containing 17 HAT or TPR repeats plays a role in pre-mRNA processing. Conserved residues in the TPR consensus sequence of 34 aa were found at hel...
Zhenglin Hou, Cunxi Wang, Odd-Arne Olsen