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HICSS
2008
IEEE
143views Biometrics» more  HICSS 2008»
13 years 11 months ago
Bounding Prefix Transposition Distance for Strings and Permutations
A transposition is an operation that exchanges two adjacent substrings. When it is restricted so that one of the substrings is a prefix, it is called a prefix transposition. The p...
Bhadrachalam Chitturi, Ivan Hal Sudborough
AB
2007
Springer
13 years 9 months ago
Prefix Reversals on Binary and Ternary Strings
Given a permutation , the application of prefix reversal f(i) to reverses the order of the first i elements of . The problem of Sorting By Prefix Reversals (also known as pancake ...
Cor A. J. Hurkens, Leo van Iersel, Judith Keijsper...
SIAMDM
2010
105views more  SIAMDM 2010»
12 years 11 months ago
A Lower Bound on the Transposition Diameter
Sorting permutations by transpositions is an important and difficult problem in genome rearrangements. The transposition diameter TD(n) is the maximum transposition distance among ...
Linyuan Lu, Yiting Yang
JCB
2002
102views more  JCB 2002»
13 years 4 months ago
A Lower Bound on the Reversal and Transposition Diameter
One possible model to study genome evolution is to represent genomes as permutations of genes and compute distances based on the minimum number of certain operations (rearrangemen...
João Meidanis, Maria Emilia Telles Walter, ...
JDA
2008
122views more  JDA 2008»
13 years 4 months ago
An approximation algorithm for sorting by reversals and transpositions
Abstract. Genome rearrangement algorithms are powerful tools to analyze gene orders in molecular evolution. Analysis of genomes evolving by reversals and transpositions leads to a ...
Atif Rahman, Swakkhar Shatabda, Masud Hasan