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» Building Large Knowledge Bases in Molecular Biology
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TITB
2002
142views more  TITB 2002»
13 years 4 months ago
Building a bioinformatics ontology using OIL
This paper describes the initial stages of building an ontology of bioinformatics and molecular biology. The conceptualisation is encoded using the Ontology Inference Layer (OIL),...
Robert Stevens, Carole A. Goble, Ian Horrocks, Sea...
BIB
2000
117views more  BIB 2000»
13 years 5 months ago
Ontology-based Knowledge Representation for Bioinformatics
Much of biology works by applying prior knowledge (`what is known') to an unknown entity, rather than the application of a set of axioms that will elicit knowledge. In additi...
Robert Stevens, Carole A. Goble, Sean Bechhofer
OWLED
2008
13 years 6 months ago
Situational Modeling: Defining Molecular Roles in Biochemical Pathways and Reactions
Central to a coherent understanding of cellular biology is a faithful representation of biochemical processes as it pertains to its molecular participants. Current representations ...
Michel Dumontier
RECOMB
1998
Springer
13 years 9 months ago
The hierarchical organization of molecular structure computations
The task of computing molecular structure from combinations of experimental and theoretical constraints is expensive because of the large number of estimated parameters (the 3D co...
Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altma...
BMCBI
2004
144views more  BMCBI 2004»
13 years 5 months ago
PASBio: predicate-argument structures for event extraction in molecular biology
Background: The exploitation of information extraction (IE), a technology aiming to provide instances of structured representations from free-form text, has been rapidly growing w...
Tuangthong Wattarujeekrit, Parantu K. Shah, Nigel ...