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» Clustering Metagenome Short Reads Using Weighted Proteins
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EVOW
2009
Springer
13 years 11 months ago
Clustering Metagenome Short Reads Using Weighted Proteins
Abstract. This paper proposes a new knowledge-based method for clustering metagenome short reads. The method incorporates biological knowledge in the clustering process, by means o...
Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, E...
PRIB
2009
Springer
100views Bioinformatics» more  PRIB 2009»
13 years 11 months ago
Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data
Abstract. The rapidly emerging field of metagenomics seeks to examine the genomic content of communities of organisms to understand their roles and interactions in an ecosystem. I...
Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, E...
BIBM
2010
IEEE
286views Bioinformatics» more  BIBM 2010»
13 years 2 months ago
Evaluation of short read metagenomic assembly
Advances in sequencing technologies have equipped researchers with the ability to sequence the collective genome of entire microbial communities commonly referred to as metagenomi...
Anveshi Charuvaka, Huzefa Rangwala
BMCBI
2008
220views more  BMCBI 2008»
13 years 4 months ago
Gene prediction in metagenomic fragments: A large scale machine learning approach
Background: Metagenomics is an approach to the characterization of microbial genomes via the direct isolation of genomic sequences from the environment without prior cultivation. ...
Katharina J. Hoff, Maike Tech, Thomas Lingner, Rol...