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ISCAS
2006
IEEE
70views Hardware» more  ISCAS 2006»
13 years 11 months ago
A systolic array technique for determining common approximate substrings
— A new technique that makes use of a systolic array structure is proposed for solving the common approximate substring (CAS) problem. This approach extends the technique introdu...
Kenneth B. Kent, Jacqueline E. Rice
IPPS
2003
IEEE
13 years 10 months ago
A BSP/CGM Algorithm for the All-Substrings Longest Common Subsequence Problem
Given two strings and of lengths Ñ and Ò, respectively, the all-substrings longest common subsequence (ALCS) problem obtains the lengths of the subsequences common to and any su...
Carlos E. R. Alves, Edson Cáceres, Siang W....
ALMOB
2008
131views more  ALMOB 2008»
13 years 5 months ago
Fast algorithms for computing sequence distances by exhaustive substring composition
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Alberto Apostolico, Olgert Denas
SIAMDM
1998
89views more  SIAMDM 1998»
13 years 5 months ago
String Noninclusion Optimization Problems
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
Anatoly R. Rubinov, Vadim G. Timkovsky
COMBINATORICS
2004
90views more  COMBINATORICS 2004»
13 years 5 months ago
Strings with Maximally Many Distinct Subsequences and Substrings
A natural problem in extremal combinatorics is to maximize the number of distinct subsequences for any length-n string over a finite alphabet ; this value grows exponentially, but...
Abraham Flaxman, Aram Wettroth Harrow, Gregory B. ...