Sciweavers

31 search results - page 1 / 7
» Comparison of computational methods for identifying translat...
Sort
View
BMCBI
2004
84views more  BMCBI 2004»
13 years 4 months ago
Comparison of computational methods for identifying translation initiation sites in EST data
Background: Expressed Sequence Tag (EST) sequences are generally single-strand, single-pass sequences, only 200
Afshin Nadershahi, Scott C. Fahrenkrug, Lynda B. M...
BMCBI
2007
147views more  BMCBI 2007»
13 years 4 months ago
Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes
Background: Computational prediction methods are currently used to identify genes in prokaryote genomes. However, identification of the correct translation initiation sites remain...
Yuko Makita, Michiel J. L. de Hoon, Antoine Danchi...
BMCBI
2006
98views more  BMCBI 2006»
13 years 4 months ago
Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation
Background: Publicly accessible EST libraries contain valuable information that can be utilized for studies of tissue-specific gene expression and processing of individual genes. ...
Donglin Liu, Joel H. Graber
BMCBI
2008
128views more  BMCBI 2008»
13 years 4 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
RECOMB
2004
Springer
14 years 4 months ago
A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs
The prediction of translation initiation sites (TISs) in eukaryotic mRNAs has been a challenging problem in computational molecular biology. In this paper, we present a new algori...
Haifeng Li, Tao Jiang