7 search results - page 1 / 2 » Compressing DNA sequence databases with coil |
BMCBI
2008
13 years 4 months ago
2008
Background: Publicly available DNA sequence databases such as GenBank are large, and are growing at an exponential rate. The sheer volume of data being dealt with presents serious...
BIBE
2005
IEEE
13 years 10 months ago
2005
IEEE
In this paper, we propose a Distance-based Sequence Indexing Method (DSIM) for indexing and searching genome databases. Borrowing the idea of video compression, we compress the ge...
ICASSP
2009
IEEE
13 years 11 months ago
2009
IEEE
The interest in DNA coding has been growing with the availability of extensive genomic databases. Although only two bits are sufficient to encode the four DNA bases, efficient l...
BMCBI
2008
13 years 4 months ago
2008
Background: With the rapid emergence of RNA databases and newly identified non-coding RNAs, an efficient compression algorithm for RNA sequence and structural information is neede...
DEXA
2009
Springer
13 years 11 months ago
2009
Springer
The alignment of noisy and uniformly scaled time series is an important but difficult task. Given two time series, one of which is a uniformly stretched subsequence of the other, w...