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» Computational Applications of DNA Structural Scales
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BMCBI
2007
159views more  BMCBI 2007»
13 years 5 months ago
Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype
Background: A finite state machine manipulating information-carrying DNA strands can be used to perform autonomous molecular-scale computations at the cellular level. Results: We ...
Israel Mark Martínez-Pérez, Gong Zha...
CVPR
2004
IEEE
14 years 7 months ago
Scale Selection for Anisotropic Scale-Space: Application to Volumetric Tumor Characterization
A unified approach for treating the scale selection problem in the anisotropic scale-space is proposed. The anisotropic scale-space is a generalization of the classical isotropic ...
Kazunori Okada, Dorin Comaniciu, Arun Krishnan
DNA
2005
Springer
118views Bioinformatics» more  DNA 2005»
13 years 10 months ago
Molecular Learning of wDNF Formulae
We introduce a class of generalized DNF formulae called wDNF or weighted disjunctive normal form, and present a molecular algorithm that learns a wDNF formula from training example...
Byoung-Tak Zhang, Ha-Young Jang
DNA
2004
Springer
157views Bioinformatics» more  DNA 2004»
13 years 10 months ago
Bond-Free Languages: Formalizations, Maximality and Construction Methods
The problem of negative design of DNA languages is addressed, that is, properties and construction methods of large sets of words that prevent undesired bonds when used in DNA com...
Lila Kari, Stavros Konstantinidis, Petr Sosí...
CIKM
2008
Springer
13 years 7 months ago
A new method for indexing genomes using on-disk suffix trees
We propose a new method to build persistent suffix trees for indexing the genomic data. Our algorithm DiGeST (Disk-Based Genomic Suffix Tree) improves significantly over previous ...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...