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BMCBI
2007
100views more  BMCBI 2007»
13 years 5 months ago
SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML)
Background: The need to build a tool to facilitate the quick creation and editing of models encoded in the Systems Biology Markup language (SBML) has been growing with the number ...
Nicolas Rodriguez, Marco Donizelli, Nicolas Le Nov...
CMSB
2004
Springer
13 years 10 months ago
Developing SBML Beyond Level 2: Proposals for Development
Abstract. The Systems Biology Markup Language (SBML) is an XMLbased exchange format for computational models of biochemical networks. SBML Level 2, whose definition was establishe...
Andrew Finney
BMCBI
2011
13 years 9 days ago
N-gram analysis of 970 microbial organisms reveals presence of biological language models
Background: It has been suggested previously that genome and proteome sequences show characteristics typical of natural-language texts such as “signature-style” word usage ind...
Hatice U. Osmanbeyoglu, Madhavi Ganapathiraju
BMCBI
2004
123views more  BMCBI 2004»
13 years 5 months ago
A two-way interface between limited Systems Biology Markup Language and R
Background: Systems Biology Markup Language (SBML) is gaining broad usage as a standard for representing dynamical systems as data structures. The open source statistical programm...
Tomas Radivoyevitch
ASM
2005
ASM
13 years 7 months ago
A Modular Design for the Common Language Runtime (CLR) Architecture
Abstract. This paper provides a modular high-level design of the Common Language Runtime (CLR) architecture. Our design is given in terms act State Machines (ASMs) and takes the fo...
Nicu G. Fruja