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» Computationally Optimised DNA Assembly of synthetic genes
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GG
2004
Springer
13 years 10 months ago
Tutorial on DNA Computing and Graph Transformation
that graph transformations provide the right level of abstraction, and useful technical tools for studying gene assembly. On the other hand, the gene assembly process inspires a ne...
Tero Harju, Ion Petre, Grzegorz Rozenberg
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
13 years 11 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
TAPIA
2009
ACM
13 years 11 months ago
A platform-based design environment for synthetic biological systems
Genomics has reached the stage at which the amount of DNA sequence information in existing databases is quite large. Synthetic biology is now using these databases to catalog sequ...
Douglas Densmore, Anne Van Devender, Matthew Johns...
DNA
2006
Springer
13 years 8 months ago
Design and Simulation of Self-repairing DNA Lattices
Self-repair is essential to all living systems, providing the ability to remain functional in spite of gradual damage. In the context of self-assembly of self-repairing synthetic b...
Urmi Majumder, Sudheer Sahu, Thomas H. LaBean, Joh...
BMCBI
2007
159views more  BMCBI 2007»
13 years 4 months ago
Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype
Background: A finite state machine manipulating information-carrying DNA strands can be used to perform autonomous molecular-scale computations at the cellular level. Results: We ...
Israel Mark Martínez-Pérez, Gong Zha...