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» Computing Molecular Potential Energy Surface with DIET
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JCC
2007
76views more  JCC 2007»
13 years 5 months ago
Valence bond theory for chemical dynamics
: This essay provides a perspective on several issues in valence bond theory: the physical significance of semilocal bonding orbitals, the capability of valence bond concepts to e...
Donald G. Truhlar
JCB
2006
79views more  JCB 2006»
13 years 5 months ago
A Stability Boundary Based Method for Finding Saddle Points on Potential Energy Surfaces
The task of finding saddle points on potential energy surfaces plays a crucial role in understanding the dynamics of a micromolecule as well as in studying the folding pathways of...
Chandan K. Reddy, Hsiao-Dong Chiang
JCC
2011
105views more  JCC 2011»
13 years 22 days ago
Wordom: A user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces
Abstract: Wordom is a versatile, user-friendly, and efficient program for manipulation and analysis of molecular structures and dynamics. The following new analysis modules have b...
Michele Seeber, Angelo Felline, Francesco Raimondi...
JCC
2008
85views more  JCC 2008»
13 years 5 months ago
Minimal molecular surfaces and their applications
Abstract: This article presents a novel concept, the minimal molecular surface (MMS), for the theoretical modeling of biomolecules. The MMS can be viewed as a result of the surface...
P. W. Bates, G. W. Wei, Shan Zhao
CIBCB
2008
IEEE
14 years 7 days ago
Parallel multi-objective algorithms for the molecular docking problem
— Molecular docking is an essential tool for drug design. It helps the scientist to rapidly know if two molecules, respectively called ligand and receptor, can be combined togeth...
Jean-Charles Boisson, Laetitia Jourdan, El-Ghazali...