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» Consensus Methods Using Phylogenetic Databases
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CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Consensus Methods Using Phylogenetic Databases
Andreas Kramer, Daniel R. Richards, James O. Bowlb...
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
13 years 10 months ago
A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance
Phylogenetic tree searching algorithms often produce thousands of trees which biologists save in Newick format in order to perform further analysis. Unfortunately, Newick is neithe...
Robert S. Boyer, Warren A. Hunt Jr., Serita M. Nel...
BMCBI
2006
116views more  BMCBI 2006»
13 years 5 months ago
TaxMan: a taxonomic database manager
Background: Phylogenetic analysis of large, multiple-gene datasets, assembled from public sequence databases, is rapidly becoming a popular way to approach difficult phylogenetic ...
Martin Jones, Mark Blaxter
WABI
2004
Springer
109views Bioinformatics» more  WABI 2004»
13 years 10 months ago
Online Consensus and Agreement of Phylogenetic Trees
Computational heuristics are the primary methods for reconstruction of phylogenetic trees on large datasets. Most large-scale phylogenetic analyses produce numerous trees that are ...
Tanya Y. Berger-Wolf
ISBRA
2010
Springer
13 years 11 months ago
Uncovering Hidden Phylogenetic Consensus
Abstract. Many of the steps in phylogenetic reconstruction can be confounded by “rogue” taxa, taxa that cannot be placed with assurance anywhere within the tree—whose locatio...
Nicholas D. Pattengale, Krister M. Swenson, Bernar...