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BMCBI
2007
105views more  BMCBI 2007»
13 years 4 months ago
Constrained hidden Markov models for population-based haplotyping
abstract Niels Landwehr1 , Taneli Mielik¨ainen2 , Lauri Eronen2 , Hannu Toivonen1,2 , and Heikki Mannila2 1 Machine Learning Lab, Dept. of Comp. Science, University of Freiburg, G...
Niels Landwehr, Taneli Mielikäinen, Lauri Ero...
WABI
2005
Springer
118views Bioinformatics» more  WABI 2005»
13 years 10 months ago
A Hidden Markov Technique for Haplotype Reconstruction
We give a new algorithm for the genotype phasing problem. Our solution is based on a hidden Markov model for haplotypes. The model has a uniform structure, unlike most solutions pr...
Pasi Rastas, Mikko Koivisto, Heikki Mannila, Esko ...
ALT
2004
Springer
14 years 1 months ago
Hidden Markov Modelling Techniques for Haplotype Analysis
Abstract. A hidden Markov model is introduced for descriptive modelling the mosaic–like structures of haplotypes, due to iterated recombinations within a population. Methods usin...
Mikko Koivisto, Teemu Kivioja, Heikki Mannila, Pas...
WABI
2010
Springer
170views Bioinformatics» more  WABI 2010»
13 years 3 months ago
Haplotypes versus Genotypes on Pedigrees
Abstract. Genome sequencing will soon produce haplotype data for individuals. For pedigrees of related individuals, sequencing appears to be an attractive alternative to genotyping...
Bonnie Kirkpatrick
WABI
2007
Springer
13 years 11 months ago
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity
Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc