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    BMCBI
    2007
    247views more  BMCBI 2007»
    A survey of DNA motif finding algorithms
    13 years 5 months ago
    A survey of DNA motif finding algorithms
    Download  www.biomedcentral.com
    Background: Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especi...
    Modan K. Das, Ho-Kwok Dai
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    BMCBI
    2007
    147views more  BMCBI 2007»
    Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining
    13 years 5 months ago
    Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining
    Download  www.biomedcentral.com
    Background: Cis-acting transcriptional regulatory elements in mammalian genomes typically contain specific combinations of binding sites for various transcription factors. Althoug...
    Xochitl C. Morgan, Shulin Ni, Daniel P. Miranker, ...
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    BMCBI
    2005
    130views more  BMCBI 2005»
    Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
    13 years 5 months ago
    Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
    Download  uhra.herts.ac.uk
    Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
    Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
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    BMCBI
    2008
    118views more  BMCBI 2008»
    Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
    13 years 5 months ago
    Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
    Download  www.biomedcentral.com
    Background: The detection of conserved motifs in promoters of orthologous genes (phylogenetic footprints) has become a common strategy to predict cis-acting regulatory elements. S...
    Rekin's Janky, Jacques van Helden
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    CIBCB
    2005
    IEEE
    80views Computational Biology» more  CIBCB 2005»
    A Transcriptional Approach to Gene Clustering
    13 years 7 months ago
    A Transcriptional Approach to Gene Clustering
    Download  www.tagkopouloslab.cs.ucdavis.edu
    — We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
    Ilias Tagkopoulos
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