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» DNA Computing for Complex Scheduling Problem
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DISOPT
2007
93views more  DISOPT 2007»
13 years 4 months ago
A polynomial time equivalence between DNA sequencing and the exact perfect matching problem
We investigate the computational complexity of a combinatorial problem that arises in DNA sequencing by hybridization: The input consists of an integer together with a set S of wo...
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak...
AAIM
2006
Springer
75views Algorithms» more  AAIM 2006»
13 years 11 months ago
Subsequence Packing: Complexity, Approximation, and Application
We study the subsequence packing problem: given a string T and a collection of strings {Si}, find disjoint subsequences {Ti} of T with maximum total length such that each Ti is a ...
Minghui Jiang
DNA
2009
Springer
185views Bioinformatics» more  DNA 2009»
13 years 11 months ago
NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots
Knowledge of energy barriers between pairs of secondary structures for a given DNA or RNA molecule is useful, both in understanding RNA function in biological settings and in desig...
Ján Manuch, Chris Thachuk, Ladislav Stacho,...
UC
2005
Springer
13 years 10 months ago
A Computational Model for Self-assembling Flexible Tiles
We present a theoretical model for self-assembling tiles with flexible branches motivated by DNA branched junction molecules. We encode an instance of a “problem” as a pot of ...
Natasa Jonoska, Gregory L. McColm
WICON
2008
13 years 6 months ago
On the practical complexity of solving the maximum weighted independent set problem for optimal scheduling in wireless networks
It is well known that the maximum weighted independent set (MWIS) problem is NP-complete. Moreover, optimal scheduling in wireless networks requires solving a MWIS problem. Conseq...
Peng Wang, Stephan Bohacek