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» DNA Sequence Design Using Templates
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NGC
2002
Springer
13 years 4 months ago
DNA Sequence Design Using Templates
Sequence design is a crucial problem in information-based biotechnology such as DNA-based computation. We introduce a simple strategy named template method that systematically gene...
Masanori Arita, Satoshi Kobayashi
DNA
2005
Springer
144views Bioinformatics» more  DNA 2005»
13 years 10 months ago
Designing Nucleotide Sequences for Computation: A Survey of Constraints
We survey the biochemical constraints useful for the design of DNA code words for DNA computation. We define the DNA/RNA Code Constraint problem and cover biochemistry topics rel...
Jennifer A. Sager, Darko Stefanovic
BMCBI
2004
146views more  BMCBI 2004»
13 years 4 months ago
The InDeVal insertion/deletion evaluation tool: a program for finding target regions in DNA sequences and for aiding in sequence
Background: The program InDeVal was originally developed to help researchers find known regions of insertion/deletion activity (with the exception of isolated single-base indels) ...
Sierra D. Stoneberg Holt, Jason A. Holt
BMCBI
2005
84views more  BMCBI 2005»
13 years 4 months ago
Information theory-based algorithm for in silico prediction of PCR products with whole genomic sequences as templates
Background: A new algorithm for assessing similarity between primer and template has been developed based on the hypothesis that annealing of primer to template is an information ...
Youfang Cao, Lianjie Wang, Kexue Xu, Chunhai Kou, ...
ACRI
2008
Springer
13 years 11 months ago
Automatic Design of FPGA Processor for the Backtracking of DNA Sequences Evolution Using Cellular Automata and Genetic Algorithm
In several cases, the DNA sequences of an organism are available in different stages of its evolution and it is desirable to reconstruct the DNA sequence in a previous evolution st...
Georgios Ch. Sirakoulis