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» Decompositions into Subgraphs of Small Diameter
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CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
WADS
2007
Springer
104views Algorithms» more  WADS 2007»
13 years 11 months ago
Faster Approximation of Distances in Graphs
Let G = (V, E) be an weighted undirected graph on n vertices and m edges, and let dG be its shortest path metric. We present two simple deterministic algorithms for approximating ...
Piotr Berman, Shiva Prasad Kasiviswanathan
WADS
2007
Springer
180views Algorithms» more  WADS 2007»
13 years 11 months ago
Spanners for Geometric Intersection Graphs
A ball graph is an intersection graph of a set of balls with arbitrary radii. Given a real number t > 1, we say that a subgraph G′ of a graph G is a t-spanner of G, if for eve...
Martin Fürer, Shiva Prasad Kasiviswanathan