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BMCBI
2004
151views more  BMCBI 2004»
10 years 2 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich
APBC
2004
173views Bioinformatics» more  APBC 2004»
10 years 4 months ago
RNA Secondary Structure Prediction with Simple Pseudoknots
Pseudoknots are widely occurring structural motifs in RNA. Pseudoknots have been shown to be functionally important in different RNAs which play regulatory, catalytic, or structur...
Jitender S. Deogun, Ruben Donts, Olga Komina, Fang...
WABI
2010
Springer
188views Bioinformatics» more  WABI 2010»
10 years 1 months ago
Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs
Abstract. We present three heuristic strategies for folding RNA sequences into secondary structures including kissing hairpin motifs. The new idea is to construct a kissing hairpin...
Corinna Theis, Stefan Janssen, Robert Giegerich
DEXA
2006
Springer
193views Database» more  DEXA 2006»
10 years 6 months ago
Understanding and Enhancing the Folding-In Method in Latent Semantic Indexing
Abstract. Latent Semantic Indexing(LSI) has been proved to be effective to capture the semantic structure of document collections. It is widely used in content-based text retrieval...
Xiang Wang 0002, Xiaoming Jin
TVCG
2010
161views more  TVCG 2010»
10 years 1 months ago
Origamizing Polyhedral Surfaces
—This paper presents the first practical method for “origamizing” or obtaining the folding pattern that folds a single sheet of material into a given polyhedral surface with...
Tomohiro Tachi
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